Well, strictly speaking Alt.Binz isn't a commercial program (donations grant Contributor status), and the reason Binsearch doesn't work in 0.25.0 is because of changes Binsearch made to the site. Nobody is being made to pay anything (the site itself can still be used via browser with 0.25.0 w/o probs), and Binsearch is only one component of Alt.Binz, not its main purpose for being.
That said, the blanket ban on integration in 3rd-party programs seems odd. I don't see how that follows automatically from their statement regarding non-commercial use, and results are in any case still being displayed ...